The goal of the laboratory is to unravel the biological mechanisms leading to primary liver and biliary tract cancers and thus, understand the molecular pathogenesis. Our ambition is to translate solutions to the clinic for improved patient outcome.
We focus mainly on omics-driven solutions to unravel perturbed mechanisms required for the tumor to develop, to grow and to metastasize. Primary liver cancers (PLC) often evade diagnosis until late-stage in the disease where the tumor is locally advanced or metastatic. We utilize genome-wide approaches in patient characterization and stratification, diagnostic and prognostic biomarkers to facilitate precision therapy.
- Dual-initiation at intertwined TSS.
Nepal et al. Nature Communications, 2020. Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.
- Elucidation of the regulatory roles of HOTAIR.
Nepal et al. iScience, 2020. Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans.
- Theranostic response signature defining NOTCH-driven cholangiocarcinoma.
O’Rourke et al. Hepatology, 2019. Identification of a pan-gamma-secretase inhibitor response signature for notch-driven cholangiocarcinoma.
- Novel integrative genomic strategy to stratify intrahepatic cholangiocarcinoma patients.
Nepal et al. Hepatology, 2017. Genomic perturbations reveal distinct regulatory networks in intrahepatic cholangiocarcinoma.
Technology in our laboratory spans broadly genomic and epigenomic characterization, functional high-throughput screens to elucidate disease-relevant genes and drug resistant mechanisms as well as disease-modelling in primary cultures and mice over diagnostic or metabolic rearrangement in the early onset of liver disease.
Understanding the molecular pathogenesis of hepatobiliary cancers. Despite tantalizing clues as to the importance of genetics in hepatobiliary carcinogenesis, little is known about the genetic underpinnings of these malignancies. In this program, our primary goal is to characterize the molecular alterations important in intrahepatic and extrahepatic bile duct cancers, leveraging a multi-omics approach to emphasize patient subset for precision therapy.
Characterizing the deregulated epigenomic control in metastasis and guiding treatment. Epigenetic alterations ‘epimutations’ comprise alternative genomic perturbation mechanisms, the dynamic nature of which may present rapid tumor diversification during disease progression. We know primary liver cancers are highly polarized at the epigenomic level both in the primary and metastatic stages of the disease. This suggests a fundamental difference in their molecular pathogenesis, which may be exploited therapeutically (epi-therapy).
Understanding the early metabolic rearrangements in the liver. The endemic increase in obesity promotes Non-Alcoholic Fatty Liver Disease (NAFLD) and Steatohepatitis (NASH), which affect up to 40% of the European population. The liver is a key organ in controlling metabolic homeostasis, and rearrangements in these processes are known to cause HCC. However, the exact alterations causing metabolic disease to progress to HCC remain elusive. Manipulation of central genes controlling the metabolic imbalance will allow us to understand the biology and consequence in HCC progression. This knowledge is crucial to improve diagnosis, patient stratification and design novel treatment options.
Utilizing non-coding RNAs in biomarker discovery and drug resistance. To elucidate the role of ncRNAs in diagnosis, prognosis and in controlling treatment resistant mechanisms.
Identification of a pan-gamma-secretase inhibitor response signature for notch-driven cholangiocarcinoma. O'Rourke CJ, Matter MS, Nepal C, Caetano-Oliveira R, Ton PT, Factor VM, Andersen JB. Hepatology. 2019 Jun 18. PMID:31211856
Epigenome Remodeling in Cholangiocarcinoma. O'Rourke CJ, Lafuente-Barquero J, Andersen JB. Trends in Cancer. 2019 Jun;5(6):335-350. Review. PMID:31208696
Genomic perturbations reveal distinct regulatory networks in intrahepatic cholangiocarcinoma. Nepal C, O'Rourke CJ, Oliveira DVNP, Taranta A, Shema S, Gautam P, Calderaro J, Barbour A, Raggi C, Wennerberg K, Wang XW, Lautem A, Roberts LR, Andersen JB. Hepatology. 2018 Sep;68(3):949-963. PMID:29278425
Desmoplastic Tumor Microenvironment and Immunotherapy in Cholangiocarcinoma. Høgdall D, Lewinska M, Andersen JB. Trends in Cancer. 2018 Mar;4(3):239-255. Review. PMID:29506673
MIR21 Drives Resistance to Heat Shock Protein 90 Inhibition in Cholangiocarcinoma. Lampis A, Carotenuto P, Vlachogiannis G, Cascione L, Hedayat S, Burke R, Clarke P, Bosma E, Simbolo M, Scarpa A, Yu S, Cole R, Smyth E, Mateos JF, Begum R, Hezelova B, Eltahir Z, Wotherspoon A, Fotiadis N, Bali MA, Nepal C, Khan K, Stubbs M, Hahne JC, Gasparini P, Guzzardo V, Croce CM, Eccles S, Fassan M, Cunningham D, Andersen JB, Workman P, Valeri N, Braconi C. Gastroenterology. 2018 Mar;154(4):1066-1079. PMID:29113809
Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma. Chaisaingmongkol J, Budhu A, Dang H, Rabibhadana S, Pupacdi B, Kwon SM, Forgues M, Pomyen Y, Bhudhisawasdi V, Lertprasertsuke N, Chotirosniramit A, Pairojkul C, Auewarakul CU, Sricharunrat T, Phornphutkul K, Sangrajrang S, Cam M, He P, Hewitt SM, Ylaya K, Wu X, Andersen JB, Thorgeirsson SS, Waterfall JJ, Zhu YJ, Walling J, Stevenson HS, Edelman D, Meltzer PS, Loffredo CA, Hama N, Shibata T, Wiltrout RH, Harris CC, Mahidol C, Ruchirawat M, Wang XW; TIGER-LC Consortium. Cancer Cell. 2017 Jul 10;32(1):57-70. PMID:28648284
Association of Aflatoxin and Gallbladder Cancer. Koshiol J, Gao YT, Dean M, Egner P, Nepal C, Jones K, Wang B, Rashid A, Luo W, Van Dyke AL, Ferreccio C, Malasky M, Shen MC, Zhu B, Andersen JB, Hildesheim A, Hsing AW, Groopman J. Gastroenterology. 2017 Aug;153(2):488-494. PMID:28428144
An integrative approach unveils FOSL1 as an oncogene vulnerability in KRAS-driven lung and pancreatic cancer. Vallejo A, Perurena N, Guruceaga E, Mazur PK, Martinez-Canarias S, Zandueta C, Valencia K, Arricibita A, Gwinn D, Sayles LC, Chuang CH, Guembe L, Bailey P, Chang DK, Biankin A, Ponz-Sarvise M, Andersen JB, Khatri P, Bozec A, Sweet-Cordero EA, Sage J, Lecanda F, Vicent S. Nature Communications. 2017 Feb 21;8:14294. PMID:28220783
News from Andersen group
In the media
09.05.2020 by Science News
10.12.2019 by Science News
07.06.2019 by CORDIS
11.01.2018 by Danish Cancer Society
Prizes, Honors and Awards
1. The Cancer Genome Atlas is a landmark cancer genomics program molecularly characterizing 33 cancer types funded by the National Institutes of Health (NIH), USA. The Andersen group has participated in these networks.
- TCGA CHOL Network
- TCGA Pan-Cancer TGF-beta Superfamily Network
- Tumor Molecular Pathology (TMP) Analysis Network (ongoing)
2. The European Network for the Study of Cholangiocarcinoma is a network constituting research group located in 13 European countries with focus on the pathophysiology of the biliary tree and development of cholangiocarcinoma. Dr. Andersen co-founded the network and is currently in the steering committee
3. EUROPEAN CHOLANGIOCARCINOMA NETWORK is a network focused on cholangiocarcinoma in Europe. This Cost Action CA18122 is funded by the European Commission. Dr. Andersen is representative of Denmark in the Cost management and chair of the Molecular profiling working group.
4. International Cholangiocarcinoma Research Network is part of the Cholangiocarcinoma Foundation in Salt Lake City, USA. The goal of ICRN is to accelerate the clinical translation of scientific discoveries to impact the lives of patients with cholangiocarcinoma.
5. The global Cholangiocarcinoma Alliance is uniting the global voice in the fight against cholangiocarcinoma. The Alliance is funded by AMMF, the UK Cholangiocarcinoma charity. Dr. Andersen is member of the steering committee.
NOVO NORDISK Foundation Hallas Møller award
FSS Sapere Aude 2
Lundbeck Foundation Individual postdoc fellowship
Danish Cancer Society Merit award for Cancer Research, Knæk Cancer, Project funding
European Association for the
|Marie Curie: Individual postdoc fellowships|
|DANSK KRÆFTFORSKNINGS FOND||Dansk Kræftforskningsfond: Project|
AP Møller Fonden: Technology grant
|No logo available||Arvid Nilssons Fond: project|
The Lundbeck Foundation: Individual PhD fellowship
|Roche Denmark A/S: Project|
Beckett Fonden: Project
Herlev Hospitals forskningsfond & Capital Region: MD, PhD salary
Aase og Ejnar Danielsens fond: project
|No logo available||
Fabrikant Ejner Willumsens mindelegat: Project